PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Dca13949.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Caryophyllaceae; Caryophylleae; Dianthus
Family FAR1
Protein Properties Length: 732aa    MW: 83655.7 Da    PI: 7.3617
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Dca13949.1genomeDCAView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.62e-1385178190
        FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                 +fYn Y+   GF +rk + k+  r+++ +++  vC++ g+   +k+        e+  r +++ ++gCka++++    +gk+ v+++ +eHnHel 
  Dca13949.1  85 NFYNIYGIGSGFGTRKYTAKHW-RDRSLKSKLIVCNRVGSYYAKKNPskeddsVETIGRITSVLNVGCKARIRLFCL-NGKFTVDEFTEEHNHELL 178
                 6****************99988.7788***********987776666555555555556788889*********998.9***************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1085178IPR004330FAR1 DNA binding domain
PfamPF105511.5E-29300392IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 732 aa     Download sequence    Send to blast
MDNSNMLQAV IGVDFNGGCR GIVRRLSEDT VVGADYCGGC RDLAVGSLEG VDLNGINEGA  60
LCENVEKDFK PYVGQEFVSV EEAANFYNIY GIGSGFGTRK YTAKHWRDRS LKSKLIVCNR  120
VGSYYAKKNP SKEDDSVETI GRITSVLNVG CKARIRLFCL NGKFTVDEFT EEHNHELLSV  180
QEREFKKLAS NLTDYHKNFI VSNIRLKIGA TKTYRMIKEH VNGFSNVGAT LNQFKNFQRD  240
LKCFIHEKDG QLFVDRFKSM ADNRSGFFFD FDVDADGSLR RAIWADAEAI RNYEVFGDAL  300
SFDPTYSTNK YSMIFTPFTG VDNHKSTITF SGALIANEDY ESFNWVFDRF LKAMGGKEPE  360
YIITDQDPAI IKSVGHIFKR SRHRFCMWHI MNKVPLKFGG ASSDLTEFVR KLNGIVWDAE  420
IGAAEFDCRW LEIINEHGVG KGDWFEECFS IRRQWVMAHC RDLRMGSLLR TTQRSESSNS  480
FFKKFEHKSG TLVEFWLRFE SAIEQQRHNK NILDTKDRHS TPTTMITKSK IEEYGAKVYT  540
HKIFQEFQEE VRCSISNCIV RGYREEDDEQ ITTLKGSADD IVIDVHYNPV FEIGEGVQQL  600
QLSSARNQDG RQSEMTKLWA EIHETVAFVQ RGDLPNVIEL CENLKKFREE HKSCAETVTK  660
DQEFENLLGC KVISEVSILP PKQSKNKGSG KRMLSSKNVA VAVASKQKRM CKNCKQLANH  720
DKRNCPFPFV ED
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.15e-61FAR1-related sequence 5